*Note: The Article Page HTML is the code used to generate the article pages in each Silo of your site. For example, if you have a Silo named 'Coffee Pod Machines', when your site visitor navigates from the Silo to your Article 'Best Coffee Pod Brands', the URL of the article page is 'http://www.coffeepodsgalore.com/Coffee-Pod-Machines/Best-Coffee-Pod-Brands.html (if you have selected 'Full Path' and '.html' in the Theme Details - File Structure tab - this article page URL will be different if you selected the 'Virtual' or 'Hybrid' option and will instead be 'http://www.coffeepodsgalore.com/Best-Coffee-Pod-Brands.html).
1) Click the 'Article Page HTML' tab and paste in your template's Article Page HTML:

2) Modify your template so the Article Page Tokens (right side) appear in your template in the appropriate spot.
For example, the %%ARTICLETITLE%% token should appear in your Article Page's <title> tag, and the %%KEYWORDS%% token should appear in your META-keywords tag.
*Note: As a rule of thumb, you want the %%ARTICLETITLE%% token to also appear in the body of your page content, preferable inside a <h1> tag.
** Special Note about HTML Template Code and ThemeMatic Tokens in the Article Page HTML: The %%SILONAVMENU%%, %%ARTICLELINK%%, and %%SILOLINK%% tokens will have HTML code substituted in your template as values of an unordered list. This means you need to have an enclosing '<ul>' tag before these tokens, and ending '</ul>' tag after these tokens for well-formed HTML (see the supplied ThemeMatic templates for examples of this). The above tokens will produce the required opening '<li>' tag and closing '</li>' tag surrounding the page links for the navigation menus produced by the above tokens.
Also, the above menu tokens automatically insert 'rel=nofollow' code in the appropriate links that these menu tokens produce.
Specifically, the %%SILONAVMENU%% inserts 'rel=nofollow' code for the all the links back to the Home Page of your site and to the Silo Index Pages of your site.
The %%ARTICLELINK% and %%SILOLINK%% tokens has NO 'rel=nofollow' so the search engines can follow the link(s) to the next article or silo in your site.
If there are no link(s) created in ThemeMatic for an Article (see the Quick Start Guide - Step 12 - Add Article Links and Theme Master View - View Blueprint Button for how to create these links) , the %%ARTICLELINK% and/or %%SILOLINK%% tokens will not produce HTML code in your template (which is what you want).
This use of 'rel=nofollow' code for the above links on pages of your site forces the search engines to navigate and index your site in a way that builds Theme relevance and Theme density, and prevents Theme bleeding. For more information, download the free report at:
http://www.themematic.com/themasterplanprimer.pdf